web tool morpheus (Broad Institute Inc)
90
Structured Review
Broad Institute Inc
web tool morpheus
Web Tool Morpheus, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/morpheus+tool/morpheus+webtool/bio_rxiv__2025__07__18__665515-204-5-8
Average 90 stars, based on 1 article reviews
Web Tool Morpheus, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/morpheus+tool/morpheus+webtool/bio_rxiv__2025__07__18__665515-204-5-8
Average 90 stars, based on 1 article reviews
web tool morpheus - by Bioz Stars,
2026-09
90/100 stars
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Generated:Article Title: Supporting Information for Type I interferon signaling pathway enhances immune-checkpoint inhibition in KRAS mutant lung tumors Article Snippet: .. A heat map was generated using the Article Title: A mitochondrial surveillance mechanism activated by SRSF2 mutations in hematologic malignancies Article Snippet: .. Heatmaps for BCL2 family gene expression and mitophagy-related gene expression were generated using the Article Title: Bacopa monnieri confers neuroprotection by influencing signaling pathways associated with interleukin 4, 13 and extracellular matrix organization in Alzheimer's disease: A proteomics-based perspective. Article Snippet: Alzheimer’s disease, a prevalent neurodegenerative disorder in the elderly, is characterized by the accumulation of senile plaques and neurofibrillary tangles, triggering oxidative stress, neuroinflammation, and neuronal apoptosis.. Current therapies focus on symptomatic treatment rather than targeting the underlying diseasemodifying molecular mechanisms and are often associated with significant side effects.. Bacopa monnieri, a traditional Indian herb with nootropic properties, has shown promise in neurological disorder treatment from ancient times. Article Title: Autophagy repression by antigen and cytokines shapes mitochondrial, migration and effector machinery in CD8 T cells. Article Snippet: P-values and fold changes for volcano plots were calculated using RStudio (v 2023.06.1+524) with the Bioconductor package “limma” (v3.54.2) . .. Heat maps were generated using the Article Title: Exercise-induced extracellular vesicles delay tumor development by igniting inflammation in an immunologically cold triple-negative breast cancer mouse model. Article Snippet: .. Heatmaps depicting fold change of expression were generated using Gene Expression:Article Title: A mitochondrial surveillance mechanism activated by SRSF2 mutations in hematologic malignancies Article Snippet: .. Heatmaps for BCL2 family gene expression and mitophagy-related gene expression were generated using the Expressing:Article Title: Exercise-induced extracellular vesicles delay tumor development by igniting inflammation in an immunologically cold triple-negative breast cancer mouse model. Article Snippet: .. Heatmaps depicting fold change of expression were generated using other:Article Title: An AI-assisted morphoproteomic approach is a supportive tool in esophagitis-related precision medicine Article Snippet: Heatmaps were created using the Morpheus tool (Broad Institute, https://software.broadinstitute.org/morpheus/ ). Article Title: Combined inhibition of KAT6A/B and Menin reverses estrogen receptor-driven gene expression programs in breast cancer. Article Snippet: All heatmaps were generated using the Broad Institute Morpheus tool (https://software.broadinstitute.org/morpheus). Recombinant:Article Title: p300/CBP is an essential driver of pathogenic enhancer activity and gene expression in Ewing sarcoma. Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models A673 ATCC CRL-1598 SKNMC ATCC HTB-10 EWS-502 dTAG Stegmaier Lab; Nabet et al, 2020 N/A A673-dHALO Tijan Lab; Chong et al, 2022 N/A Recombinant DNA N/A Antibodies P300 Bethyl A300-358A CBP Bethyl A300-362A MLL4 Millipore ABE1867 MLL4 Sigma HPA035977 MLL3 CST 53641S FLI1 Abcam ab133485 WDR5 Bethyl A302-429A UTX Bethyl A302-374A PTIP1 Bethyl A300-370A RbBP5 Bethyl A300-109A ASH2L Bethyl A300-489A H3K4me1 Abcam ab8895 H3K4me2 Abcam ab7766 H3K4me3 Abcam ab8580 H3K27ac Abcam ab4729 H3K18ac Abcam ab1191 H2BK20ac Abcam ab177430 HDAC1 Cell Signaling Technologies 5356S H3 Abcam ab1791 GAPDH Cell Signaling Technologies 5174S Oligonucleotides and other sequence-based reagents qPCR primers Dataset EV8 Reagent/resource Reference or source Identifier or catalog number Chemicals, enzymes, and other reagents dTAGv-1 R&D Systems #6914/5 dTAGv-1-NEG R&D Systems #6915/5 VH032-PEG5-C6-Cl MedChem Express #HY-112495 A-485 Qi Lab N/A dCBP-1 Ott Lab N/A CCS1477 MedChem Express #HY-111784 Xtremegene-9 Sigma-Aldrich #6365809001 Polybrene Fisher Scientific #TR1003G CellTiter-Glo Promega #G7571 High-Capacity cDNA RT kit Life Technologies #4374966 Power SYBR Green PCR MasterMix Life Technologies #4367660 Taqman Life Technologies #4369016 RNeasy mini kit Qiagen #74106 16% Formaldehyde Life Technologies #28908 Disuccinimidyl Glutarate Fisher Scientific #PI20593 ThruPLEX DNA-seq kit Takara Bio #R400676 Hydroxypropyl-βcyclodextrin Fisher Scientific #AC297561000 Matrigel VWR #47743-722 NEBNext rRNA Depletion V2 kit New England Biolabs #E7405L NEBNext Ultra II RNA library prep kit New England Biolabs #E7770L Software Sequencing:Article Title: p300/CBP is an essential driver of pathogenic enhancer activity and gene expression in Ewing sarcoma. Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models A673 ATCC CRL-1598 SKNMC ATCC HTB-10 EWS-502 dTAG Stegmaier Lab; Nabet et al, 2020 N/A A673-dHALO Tijan Lab; Chong et al, 2022 N/A Recombinant DNA N/A Antibodies P300 Bethyl A300-358A CBP Bethyl A300-362A MLL4 Millipore ABE1867 MLL4 Sigma HPA035977 MLL3 CST 53641S FLI1 Abcam ab133485 WDR5 Bethyl A302-429A UTX Bethyl A302-374A PTIP1 Bethyl A300-370A RbBP5 Bethyl A300-109A ASH2L Bethyl A300-489A H3K4me1 Abcam ab8895 H3K4me2 Abcam ab7766 H3K4me3 Abcam ab8580 H3K27ac Abcam ab4729 H3K18ac Abcam ab1191 H2BK20ac Abcam ab177430 HDAC1 Cell Signaling Technologies 5356S H3 Abcam ab1791 GAPDH Cell Signaling Technologies 5174S Oligonucleotides and other sequence-based reagents qPCR primers Dataset EV8 Reagent/resource Reference or source Identifier or catalog number Chemicals, enzymes, and other reagents dTAGv-1 R&D Systems #6914/5 dTAGv-1-NEG R&D Systems #6915/5 VH032-PEG5-C6-Cl MedChem Express #HY-112495 A-485 Qi Lab N/A dCBP-1 Ott Lab N/A CCS1477 MedChem Express #HY-111784 Xtremegene-9 Sigma-Aldrich #6365809001 Polybrene Fisher Scientific #TR1003G CellTiter-Glo Promega #G7571 High-Capacity cDNA RT kit Life Technologies #4374966 Power SYBR Green PCR MasterMix Life Technologies #4367660 Taqman Life Technologies #4369016 RNeasy mini kit Qiagen #74106 16% Formaldehyde Life Technologies #28908 Disuccinimidyl Glutarate Fisher Scientific #PI20593 ThruPLEX DNA-seq kit Takara Bio #R400676 Hydroxypropyl-βcyclodextrin Fisher Scientific #AC297561000 Matrigel VWR #47743-722 NEBNext rRNA Depletion V2 kit New England Biolabs #E7405L NEBNext Ultra II RNA library prep kit New England Biolabs #E7770L Software Real-time Polymerase Chain Reaction:Article Title: p300/CBP is an essential driver of pathogenic enhancer activity and gene expression in Ewing sarcoma. Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models A673 ATCC CRL-1598 SKNMC ATCC HTB-10 EWS-502 dTAG Stegmaier Lab; Nabet et al, 2020 N/A A673-dHALO Tijan Lab; Chong et al, 2022 N/A Recombinant DNA N/A Antibodies P300 Bethyl A300-358A CBP Bethyl A300-362A MLL4 Millipore ABE1867 MLL4 Sigma HPA035977 MLL3 CST 53641S FLI1 Abcam ab133485 WDR5 Bethyl A302-429A UTX Bethyl A302-374A PTIP1 Bethyl A300-370A RbBP5 Bethyl A300-109A ASH2L Bethyl A300-489A H3K4me1 Abcam ab8895 H3K4me2 Abcam ab7766 H3K4me3 Abcam ab8580 H3K27ac Abcam ab4729 H3K18ac Abcam ab1191 H2BK20ac Abcam ab177430 HDAC1 Cell Signaling Technologies 5356S H3 Abcam ab1791 GAPDH Cell Signaling Technologies 5174S Oligonucleotides and other sequence-based reagents qPCR primers Dataset EV8 Reagent/resource Reference or source Identifier or catalog number Chemicals, enzymes, and other reagents dTAGv-1 R&D Systems #6914/5 dTAGv-1-NEG R&D Systems #6915/5 VH032-PEG5-C6-Cl MedChem Express #HY-112495 A-485 Qi Lab N/A dCBP-1 Ott Lab N/A CCS1477 MedChem Express #HY-111784 Xtremegene-9 Sigma-Aldrich #6365809001 Polybrene Fisher Scientific #TR1003G CellTiter-Glo Promega #G7571 High-Capacity cDNA RT kit Life Technologies #4374966 Power SYBR Green PCR MasterMix Life Technologies #4367660 Taqman Life Technologies #4369016 RNeasy mini kit Qiagen #74106 16% Formaldehyde Life Technologies #28908 Disuccinimidyl Glutarate Fisher Scientific #PI20593 ThruPLEX DNA-seq kit Takara Bio #R400676 Hydroxypropyl-βcyclodextrin Fisher Scientific #AC297561000 Matrigel VWR #47743-722 NEBNext rRNA Depletion V2 kit New England Biolabs #E7405L NEBNext Ultra II RNA library prep kit New England Biolabs #E7770L Software SYBR Green Assay:Article Title: p300/CBP is an essential driver of pathogenic enhancer activity and gene expression in Ewing sarcoma. Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models A673 ATCC CRL-1598 SKNMC ATCC HTB-10 EWS-502 dTAG Stegmaier Lab; Nabet et al, 2020 N/A A673-dHALO Tijan Lab; Chong et al, 2022 N/A Recombinant DNA N/A Antibodies P300 Bethyl A300-358A CBP Bethyl A300-362A MLL4 Millipore ABE1867 MLL4 Sigma HPA035977 MLL3 CST 53641S FLI1 Abcam ab133485 WDR5 Bethyl A302-429A UTX Bethyl A302-374A PTIP1 Bethyl A300-370A RbBP5 Bethyl A300-109A ASH2L Bethyl A300-489A H3K4me1 Abcam ab8895 H3K4me2 Abcam ab7766 H3K4me3 Abcam ab8580 H3K27ac Abcam ab4729 H3K18ac Abcam ab1191 H2BK20ac Abcam ab177430 HDAC1 Cell Signaling Technologies 5356S H3 Abcam ab1791 GAPDH Cell Signaling Technologies 5174S Oligonucleotides and other sequence-based reagents qPCR primers Dataset EV8 Reagent/resource Reference or source Identifier or catalog number Chemicals, enzymes, and other reagents dTAGv-1 R&D Systems #6914/5 dTAGv-1-NEG R&D Systems #6915/5 VH032-PEG5-C6-Cl MedChem Express #HY-112495 A-485 Qi Lab N/A dCBP-1 Ott Lab N/A CCS1477 MedChem Express #HY-111784 Xtremegene-9 Sigma-Aldrich #6365809001 Polybrene Fisher Scientific #TR1003G CellTiter-Glo Promega #G7571 High-Capacity cDNA RT kit Life Technologies #4374966 Power SYBR Green PCR MasterMix Life Technologies #4367660 Taqman Life Technologies #4369016 RNeasy mini kit Qiagen #74106 16% Formaldehyde Life Technologies #28908 Disuccinimidyl Glutarate Fisher Scientific #PI20593 ThruPLEX DNA-seq kit Takara Bio #R400676 Hydroxypropyl-βcyclodextrin Fisher Scientific #AC297561000 Matrigel VWR #47743-722 NEBNext rRNA Depletion V2 kit New England Biolabs #E7405L NEBNext Ultra II RNA library prep kit New England Biolabs #E7770L Software Polymerase Chain Reaction:Article Title: p300/CBP is an essential driver of pathogenic enhancer activity and gene expression in Ewing sarcoma. Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models A673 ATCC CRL-1598 SKNMC ATCC HTB-10 EWS-502 dTAG Stegmaier Lab; Nabet et al, 2020 N/A A673-dHALO Tijan Lab; Chong et al, 2022 N/A Recombinant DNA N/A Antibodies P300 Bethyl A300-358A CBP Bethyl A300-362A MLL4 Millipore ABE1867 MLL4 Sigma HPA035977 MLL3 CST 53641S FLI1 Abcam ab133485 WDR5 Bethyl A302-429A UTX Bethyl A302-374A PTIP1 Bethyl A300-370A RbBP5 Bethyl A300-109A ASH2L Bethyl A300-489A H3K4me1 Abcam ab8895 H3K4me2 Abcam ab7766 H3K4me3 Abcam ab8580 H3K27ac Abcam ab4729 H3K18ac Abcam ab1191 H2BK20ac Abcam ab177430 HDAC1 Cell Signaling Technologies 5356S H3 Abcam ab1791 GAPDH Cell Signaling Technologies 5174S Oligonucleotides and other sequence-based reagents qPCR primers Dataset EV8 Reagent/resource Reference or source Identifier or catalog number Chemicals, enzymes, and other reagents dTAGv-1 R&D Systems #6914/5 dTAGv-1-NEG R&D Systems #6915/5 VH032-PEG5-C6-Cl MedChem Express #HY-112495 A-485 Qi Lab N/A dCBP-1 Ott Lab N/A CCS1477 MedChem Express #HY-111784 Xtremegene-9 Sigma-Aldrich #6365809001 Polybrene Fisher Scientific #TR1003G CellTiter-Glo Promega #G7571 High-Capacity cDNA RT kit Life Technologies #4374966 Power SYBR Green PCR MasterMix Life Technologies #4367660 Taqman Life Technologies #4369016 RNeasy mini kit Qiagen #74106 16% Formaldehyde Life Technologies #28908 Disuccinimidyl Glutarate Fisher Scientific #PI20593 ThruPLEX DNA-seq kit Takara Bio #R400676 Hydroxypropyl-βcyclodextrin Fisher Scientific #AC297561000 Matrigel VWR #47743-722 NEBNext rRNA Depletion V2 kit New England Biolabs #E7405L NEBNext Ultra II RNA library prep kit New England Biolabs #E7770L Software Software:Article Title: p300/CBP is an essential driver of pathogenic enhancer activity and gene expression in Ewing sarcoma. Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models A673 ATCC CRL-1598 SKNMC ATCC HTB-10 EWS-502 dTAG Stegmaier Lab; Nabet et al, 2020 N/A A673-dHALO Tijan Lab; Chong et al, 2022 N/A Recombinant DNA N/A Antibodies P300 Bethyl A300-358A CBP Bethyl A300-362A MLL4 Millipore ABE1867 MLL4 Sigma HPA035977 MLL3 CST 53641S FLI1 Abcam ab133485 WDR5 Bethyl A302-429A UTX Bethyl A302-374A PTIP1 Bethyl A300-370A RbBP5 Bethyl A300-109A ASH2L Bethyl A300-489A H3K4me1 Abcam ab8895 H3K4me2 Abcam ab7766 H3K4me3 Abcam ab8580 H3K27ac Abcam ab4729 H3K18ac Abcam ab1191 H2BK20ac Abcam ab177430 HDAC1 Cell Signaling Technologies 5356S H3 Abcam ab1791 GAPDH Cell Signaling Technologies 5174S Oligonucleotides and other sequence-based reagents qPCR primers Dataset EV8 Reagent/resource Reference or source Identifier or catalog number Chemicals, enzymes, and other reagents dTAGv-1 R&D Systems #6914/5 dTAGv-1-NEG R&D Systems #6915/5 VH032-PEG5-C6-Cl MedChem Express #HY-112495 A-485 Qi Lab N/A dCBP-1 Ott Lab N/A CCS1477 MedChem Express #HY-111784 Xtremegene-9 Sigma-Aldrich #6365809001 Polybrene Fisher Scientific #TR1003G CellTiter-Glo Promega #G7571 High-Capacity cDNA RT kit Life Technologies #4374966 Power SYBR Green PCR MasterMix Life Technologies #4367660 Taqman Life Technologies #4369016 RNeasy mini kit Qiagen #74106 16% Formaldehyde Life Technologies #28908 Disuccinimidyl Glutarate Fisher Scientific #PI20593 ThruPLEX DNA-seq kit Takara Bio #R400676 Hydroxypropyl-βcyclodextrin Fisher Scientific #AC297561000 Matrigel VWR #47743-722 NEBNext rRNA Depletion V2 kit New England Biolabs #E7405L NEBNext Ultra II RNA library prep kit New England Biolabs #E7770L Software |